CHARMM NIH vers. 24 Documentation

Quick Start

• Overview
• How to use CHARMM (usage.doc)
• Read and write data (io.doc)
• Categorized Index of .doc Files
• Annotated Index of .doc Files
• Full Alphabetic List
• Escapes

Frequently Used Commands

• coordinate manipulation and analysis (corman.doc)
• dynamics & trajectory manipulation (dynamc.doc)
• constraints & restraints (cons.doc)
• energy commands (energy.doc)
• time series, correlation functions (correl.doc)
• X11 & PostScript graphics (graphx.doc)
• nonbond options (nbonds.doc)
• energy minimization (minimiz.doc)
• atom selection (select.doc)
• miscellaneous [but very useful] commands (miscom.doc)

Quick Escapes

• NIH Homepage
• Harvard CHARMM Homepage
• Image or Text NIH Molecular Modeling Page
• Image or Text Planet Earth Homepage
• Washington Univ. Software Archive

Full List of Documentation (in alphabetic order)

analys.doc	block.doc	changelog.doc	charmm.doc
charmm_gen.doc	commands.doc	cons.doc	corman.doc
correl.doc	crystl.doc	developer.doc	dynamc.doc
energy.doc	ewald.doc	fourd.doc	graphx.doc
hbonds.doc	hbuild.doc	images.doc	install.doc
intcor.doc	io.doc		minimiz.doc	miscom.doc
mmfp.doc	molvib.doc	monitor.doc	mts.doc
nbonds.doc	nmr.doc		nose.doc	parallel.doc
parmfile.doc	pdetail.doc	pert.doc	perturb.doc
pimplem.doc	pressure.doc	qmmm.doc	replica.doc
rism.doc	rtop.doc	sbound.doc	scalar.doc
select.doc	struct.doc	support.doc	test.doc
testcase.doc	travel.doc	umbrel.doc	usage.doc
vibran.doc			

Information and HTML pages provided by:

NIH/DCRT Laboratory for Structural Biology
FDA/CBER/OVRR Biophysics Laboratory